Examples

For example, to plot the informed prior for the head volume for DMPC:

import avant.parameter.vh as vh
vh.plotGauss('DMPC')

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
/tmp/ipykernel_124/3786636547.py in <module>
----> 1 import avant.parameter.vh as vh
      2 vh.plotGauss('DMPC')

ModuleNotFoundError: No module named 'avant'

For example, to plot the uniform prior for the head volume for DMPC:

import avant.parameter.vh as vh
vh.plotUniform('DMPC')

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
/tmp/ipykernel_124/4090706304.py in <module>
----> 1 import avant.parameter.vh as vh
      2 vh.plotUniform('DMPC')

ModuleNotFoundError: No module named 'avant'

Here is an example of setting the value of the parameter to that of the Gauss object - this is a class containing statistical information about the prior and can be fed straight into Refnx.

For example, to set a parameter for the head volume of DMPC:

import avant.parameter.vh as vh
x = vh.Gauss('DMPC')

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
/tmp/ipykernel_124/3562674503.py in <module>
----> 1 import avant.parameter.vh as vh
      2 x = vh.Gauss('DMPC')

ModuleNotFoundError: No module named 'avant'

Here is an example of setting the value of the parameter to a tuple containing the lower and upper bound of the uniform range of values for the parameter. This can be fed straight into Refnx.

For example, to set a parameter for the head volume of DMPC:

import avant.parameter.vh as vh
x = vh.uniform('DMPC')

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
/tmp/ipykernel_124/3915618590.py in <module>
----> 1 import avant.parameter.vh as vh
      2 x = vh.uniform('DMPC')

ModuleNotFoundError: No module named 'avant'